IL_4V8Z_129

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

4V8Z|1|B5|A|1103

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_129 not in the Motif Atlas

Homologous match to IL_8C3A_039

Geometric discrepancy: 0.4645

The information below is about IL_8C3A_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_59027.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

4V8Z|1|B5|C|977
4V8Z|1|B5|G|978
4V8Z|1|B5|U|979
4V8Z|1|B5|A|980
4V8Z|1|B5|U|981
4V8Z|1|B5|C|982
*
4V8Z|1|B5|G|1101
4V8Z|1|B5|A|1102
4V8Z|1|B5|A|1103
4V8Z|1|B5|G|1104

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BF

60S RIBOSOMAL PROTEIN L7-A

Chain BQ

60S RIBOSOMAL PROTEIN L18-A

Chain Bb

60S RIBOSOMAL PROTEIN L29