IL_4V8Z_137

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UCCG*UG

Length

6 nucleotides

Bulged bases

4V8Z|1|B5|C|1016, 4V8Z|1|B5|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_137 not in the Motif Atlas

Geometric match to IL_4LFB_005

Geometric discrepancy: 0.2927

The information below is about IL_4LFB_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V8Z|1|B5|U|1015
4V8Z|1|B5|C|1016
4V8Z|1|B5|C|1017
4V8Z|1|B5|G|1018
*
4V8Z|1|B5|U|1034
4V8Z|1|B5|G|1035

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain A7

SUPPRESSOR PROTEIN STM1

Chain BI

60S RIBOSOMAL PROTEIN L10

Chain BJ

60S RIBOSOMAL PROTEIN L11-A