IL_4V8Z_141

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

4V8Z|1|B5|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_141 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.1352

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V8Z|1|B5|U|1074
4V8Z|1|B5|A|1075
4V8Z|1|B5|C|1076
*
4V8Z|1|B5|G|1083
4V8Z|1|B5|A|1084

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BT

60S RIBOSOMAL PROTEIN L21-A

Chain Bb

60S RIBOSOMAL PROTEIN L29