IL_4V8Z_150

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

4V8Z|1|B5|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_150 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.5636

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8Z|1|B5|G|1234
4V8Z|1|B5|U|1235
4V8Z|1|B5|G|1236
4V8Z|1|B5|G|1237
4V8Z|1|B5|C|1238
*
4V8Z|1|B5|G|1250
4V8Z|1|B5|A|1251
4V8Z|1|B5|A|1252
4V8Z|1|B5|U|1253
4V8Z|1|B5|C|1254

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BK

60S RIBOSOMAL PROTEIN L11-A

Chain Bq

60S ACIDIC RIBOSOMAL PROTEIN P0