IL_4V8Z_162

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AUU*AGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_162 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.2366

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V8Z|1|B5|A|1625
4V8Z|1|B5|U|1626
4V8Z|1|B5|U|1627
*
4V8Z|1|B5|A|1816
4V8Z|1|B5|G|1817
4V8Z|1|B5|U|1818

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BZ

60S RIBOSOMAL PROTEIN L27-A