IL_4V8Z_172

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_172 not in the Motif Atlas

Homologous match to IL_5TBW_075

Geometric discrepancy: 0.0703

The information below is about IL_5TBW_075

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

4V8Z|1|B5|A|1895
4V8Z|1|B5|A|1896
4V8Z|1|B5|G|1897
*
4V8Z|1|B5|C|2338
4V8Z|1|B5|C|2339
4V8Z|1|B5|U|2340

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BV

60S RIBOSOMAL PROTEIN L23-A

Chain BW

60S RIBOSOMAL PROTEIN L24-A