IL_4V8Z_175

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

4V8Z|1|B5|U|1931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_175 not in the Motif Atlas

Homologous match to IL_5TBW_078

Geometric discrepancy: 0.0482

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V8Z|1|B5|C|1918
4V8Z|1|B5|G|1919
4V8Z|1|B5|U|1920
4V8Z|1|B5|A|1921
4V8Z|1|B5|A|1922
4V8Z|1|B5|C|1923
*
4V8Z|1|B5|G|1928
4V8Z|1|B5|G|1929
4V8Z|1|B5|A|1930
4V8Z|1|B5|U|1931
4V8Z|1|B5|A|1932
4V8Z|1|B5|A|1933
4V8Z|1|B5|G|1934

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Bn

60S RIBOSOMAL PROTEIN L41-B