IL_4V8Z_176

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_176 not in the Motif Atlas

Homologous match to IL_5TBW_079

Geometric discrepancy: 0.0697

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8Z|1|B5|G|1940
4V8Z|1|B5|C|1941
4V8Z|1|B5|U|1942
*
4V8Z|1|B5|A|2106
4V8Z|1|B5|A|2107
4V8Z|1|B5|C|2108

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain AI

40S RIBOSOMAL PROTEIN S8-A

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain BR

60S RIBOSOMAL PROTEIN L19-B