IL_4V8Z_192
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- 4V8Z|1|B5|A|2626
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_192 not in the Motif Atlas
- Homologous match to IL_8C3A_107
- Geometric discrepancy: 0.0832
- The information below is about IL_8C3A_107
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
4V8Z|1|B5|G|2614
4V8Z|1|B5|G|2615
*
4V8Z|1|B5|C|2625
4V8Z|1|B5|A|2626
4V8Z|1|B5|C|2627
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
- Chain Bb
- 60S RIBOSOMAL PROTEIN L29
- Chain Bo
- 60S RIBOSOMAL PROTEIN L42-A
- Chain CW
- Transfer RNA; tRNA
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