IL_4V8Z_206

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

4V8Z|1|B5|A|2911

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_206 not in the Motif Atlas

Geometric match to IL_5TBW_111

Geometric discrepancy: 0.0599

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V8Z|1|B5|U|2891
4V8Z|1|B5|A|2892
*
4V8Z|1|B5|U|2909
4V8Z|1|B5|A|2910
4V8Z|1|B5|A|2911
4V8Z|1|B5|G|2912

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BO

60S RIBOSOMAL PROTEIN L16-A

Chain Bm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40