IL_4V8Z_214

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

4V8Z|1|B5|U|3078, 4V8Z|1|B5|U|3079

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_214 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.061

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V8Z|1|B5|C|3063
4V8Z|1|B5|U|3064
*
4V8Z|1|B5|A|3077
4V8Z|1|B5|U|3078
4V8Z|1|B5|U|3079
4V8Z|1|B5|G|3080

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BR

60S RIBOSOMAL PROTEIN L19-B

Chain Bd

60S RIBOSOMAL PROTEIN L31-A