IL_4V8Z_230
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_230 not in the Motif Atlas
- Geometric match to IL_4V9F_100
- Geometric discrepancy: 0.1696
- The information below is about IL_4V9F_100
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
4V8Z|1|B5|A|3342
4V8Z|1|B5|G|3343
4V8Z|1|B5|A|3344
4V8Z|1|B5|G|3345
*
4V8Z|1|B5|C|3360
4V8Z|1|B5|G|3361
4V8Z|1|B5|A|3362
4V8Z|1|B5|U|3363
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain AI
- 40S RIBOSOMAL PROTEIN S8-A
- Chain BR
- 60S RIBOSOMAL PROTEIN L19-B
Coloring options: