IL_4V8Z_233
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_233 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.0483
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8Z|1|B7|G|21
4V8Z|1|B7|A|22
4V8Z|1|B7|A|23
4V8Z|1|B7|A|24
4V8Z|1|B7|G|25
4V8Z|1|B7|C|26
4V8Z|1|B7|A|27
*
4V8Z|1|B7|U|53
4V8Z|1|B7|U|54
4V8Z|1|B7|A|55
4V8Z|1|B7|A|56
4V8Z|1|B7|G|57
4V8Z|1|B7|C|58
Current chains
- Chain B7
- 5S RIBOSOMAL RNA
Nearby chains
- Chain BD
- 60S RIBOSOMAL PROTEIN L5
- Chain BJ
- 60S RIBOSOMAL PROTEIN L11-A
Coloring options: