IL_4V8Z_242

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UUG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_242 not in the Motif Atlas

Homologous match to IL_4V9K_064

Geometric discrepancy: 0.3078

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V8Z|1|CW|U|50
4V8Z|1|CW|U|51
4V8Z|1|CW|G|52
*
4V8Z|1|CW|C|62
4V8Z|1|CW|G|63
4V8Z|1|CW|A|64

Current chains

Chain CW

EUKARYOTIC RIBOSOMAL PI TRNA

Nearby chains

Chain A7

SUPPRESSOR PROTEIN STM1

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BJ

60S RIBOSOMAL PROTEIN L11-A

Chain Bo

60S RIBOSOMAL PROTEIN L42-A