IL_4V8Z_247

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UUGGGGC*GUUCUUUGUAA

Length

18 nucleotides

Bulged bases

4V8Z|1|B5|U|252

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Z|1|B5|U|168
4V8Z|1|B5|U|169
4V8Z|1|B5|G|170
4V8Z|1|B5|G|171
4V8Z|1|B5|G|172
4V8Z|1|B5|G|173
4V8Z|1|B5|C|174
*
4V8Z|1|B5|G|244
4V8Z|1|B5|U|245
4V8Z|1|B5|U|246
4V8Z|1|B5|C|247
4V8Z|1|B5|U|248
4V8Z|1|B5|U|249
4V8Z|1|B5|U|250
4V8Z|1|B5|G|251
4V8Z|1|B5|U|252
4V8Z|1|B5|A|253
4V8Z|1|B5|A|254

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BG

60S RIBOSOMAL PROTEIN L8-A

Chain BL

60S RIBOSOMAL PROTEIN L13-A

Chain Bh

60S RIBOSOMAL PROTEIN L35-B