IL_4V8Z_251

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_251 not in the Motif Atlas

Homologous match to IL_8P9A_315

Geometric discrepancy: 0.2633

The information below is about IL_8P9A_315

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

4V8Z|1|B5|G|2206
4V8Z|1|B5|A|2207
4V8Z|1|B5|A|2208
4V8Z|1|B5|U|2209
4V8Z|1|B5|G|2210
*
4V8Z|1|B5|C|2235
4V8Z|1|B5|G|2236
4V8Z|1|B5|C|2237

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA