IL_4V8Z_253
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_253 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.057
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.3
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8Z|1|B5|C|2889
4V8Z|1|B5|A|2890
4V8Z|1|B5|U|2891
4V8Z|1|B5|A|2892
*
4V8Z|1|B5|U|2909
4V8Z|1|B5|A|2910
4V8Z|1|B5|A|2911
4V8Z|1|B5|G|2912
4V8Z|1|B5|C|2913
4V8Z|1|B5|G|2914
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BB
- 60S RIBOSOMAL PROTEIN L3
- Chain BO
- 60S RIBOSOMAL PROTEIN L16-A
- Chain BV
- 60S RIBOSOMAL PROTEIN L23-A
- Chain Bm
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
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