3D structure

PDB id
4V90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
GACAAC*GCUAAUC
Length
13 nucleotides
Bulged bases
4V90|1|AA|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V90_009 not in the Motif Atlas
Homologous match to IL_4LFB_009
Geometric discrepancy: 0.0873
The information below is about IL_4LFB_009
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_12745.1
Basepair signature
cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
1

Unit IDs

4V90|1|AA|G|148
4V90|1|AA|A|149
4V90|1|AA|C|150
4V90|1|AA|A|151
4V90|1|AA|A|152
4V90|1|AA|C|153
*
4V90|1|AA|G|168
4V90|1|AA|C|169
4V90|1|AA|U|170
4V90|1|AA|A|171
4V90|1|AA|A|172
4V90|1|AA|U|173
4V90|1|AA|C|174

Current chains

Chain AA
16S RIBOSOMAL RNA

Nearby chains

Chain AT
30S RIBOSOMAL PROTEIN S20

Coloring options:


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