IL_4V90_013

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V90|1|AA|U|244, 4V90|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V90_013 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0613

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V90|1|AA|C|242
4V90|1|AA|A|243
4V90|1|AA|U|244
4V90|1|AA|C|245
4V90|1|AA|A|246
4V90|1|AA|G|247
*
4V90|1|AA|C|277
4V90|1|AA|G|278
4V90|1|AA|A|279
4V90|1|AA|C|280
4V90|1|AA|G|281
4V90|1|AA|A|282
4V90|1|AA|C|283
4V90|1|AA|G|284

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AQ

30S RIBOSOMAL PROTEIN S17