IL_4V90_034

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGG,CCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V90_034 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.131

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V90|1|AA|U|772
4V90|1|AA|G|773
4V90|1|AA|G|774
*
4V90|1|AA|C|805
4V90|1|AA|C|806
4V90|1|AA|A|807

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AO

30S RIBOSOMAL PROTEIN S15

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BD

50S RIBOSOMAL PROTEIN L2