IL_4V90_037

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V90_037 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.065

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V90|1|AA|G|887
4V90|1|AA|G|888
4V90|1|AA|A|889
4V90|1|AA|G|890
4V90|1|AA|U|891
4V90|1|AA|A|892
4V90|1|AA|C|893
4V90|1|AA|G|894
*
4V90|1|AA|U|905
4V90|1|AA|G|906
4V90|1|AA|A|907
4V90|1|AA|A|908
4V90|1|AA|A|909
4V90|1|AA|C|910

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AQ

30S RIBOSOMAL PROTEIN S17