IL_4V90_041

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V90_041 not in the Motif Atlas

Geometric match to IL_3GM7_005

Geometric discrepancy: 0.1758

The information below is about IL_3GM7_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V90|1|AA|U|950
4V90|1|AA|G|951
4V90|1|AA|U|952
*
4V90|1|AA|A|1229
4V90|1|AA|C|1230
4V90|1|AA|G|1231

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AS

30S RIBOSOMAL PROTEIN S19

Chain AV

Transfer RNA; tRNA