IL_4V90_086

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V90_086 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.0799

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V90|1|BA|U|703
4V90|1|BA|G|704
4V90|1|BA|A|705
4V90|1|BA|A|706
4V90|1|BA|G|707
*
4V90|1|BA|U|724
4V90|1|BA|G|725
4V90|1|BA|G|726
4V90|1|BA|A|727
4V90|1|BA|G|728

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L2