IL_4V90_150

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGCG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGCG,CGCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V90_150 not in the Motif Atlas

Homologous match to IL_5J7L_327

Geometric discrepancy: 0.3297

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

4V90|1|BA|C|2103
4V90|1|BA|G|2104
4V90|1|BA|C|2105
4V90|1|BA|G|2106
*
4V90|1|BA|C|2183
4V90|1|BA|G|2184
4V90|1|BA|C|2185
4V90|1|BA|G|2186

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BC

RIBOSOMAL PROTEIN L1