IL_4V90_155

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCCCCG*UGGGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V90_155 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3608

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V90|1|BA|C|2136
4V90|1|BA|C|2137
4V90|1|BA|C|2138
4V90|1|BA|C|2139
4V90|1|BA|C|2140
4V90|1|BA|G|2141
*
4V90|1|BA|U|2150
4V90|1|BA|G|2151
4V90|1|BA|G|2152
4V90|1|BA|G|2153
4V90|1|BA|G|2154
4V90|1|BA|G|2155

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain AK

30S RIBOSOMAL PROTEIN S11

Chain BC

RIBOSOMAL PROTEIN L1