3D structure

PDB id
4V91 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGAAGUCGG*CUGUC
Length
14 nucleotides
Bulged bases
4V91|1|1|G|2335
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V91_165 not in the Motif Atlas
Homologous match to IL_8C3A_484
Geometric discrepancy: 0.0757
The information below is about IL_8C3A_484
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.2
Basepair signature
cWW-cWW-L-cWW-L-R-L-R-L-L
Number of instances in this motif group
3

Unit IDs

4V91|1|1|G|1898
4V91|1|1|G|1899
4V91|1|1|A|1900
4V91|1|1|A|1901
4V91|1|1|G|1902
4V91|1|1|U|1903
4V91|1|1|C|1904
4V91|1|1|G|1905
4V91|1|1|G|1906
*
4V91|1|1|C|2333
4V91|1|1|U|2334
4V91|1|1|G|2335
4V91|1|1|U|2336
4V91|1|1|C|2337

Current chains

Chain 1
25S RRNA

Nearby chains

Chain B
UL3
Chain V
UL14

Coloring options:


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