4V91 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4V91_020 | 1/1/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
HL_4V91_021 | 1/1/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
HL_4V91_035 | 1/1/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
HL_4V91_087 | 1/1/1680:1688 | Pseudoknot geometry | homologous HL_8P9A_148 HL_68642.1 | |
HL_4V91_041 | 1/1/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
HL_4V91_043 | 1/1/1923:1928 | No text annotation | geometric HL_7RQB_042 NA | |
HL_4V91_046 | 1/1/2135:2145 | No text annotation | homologous HL_5TBW_046 NA | |
HL_4V91_064 | 1/1/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
HL_4V91_065 | 1/1/2963:2968 | GNRA | homologous HL_8C3A_065 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V91_001 | No text annotation | ||
HL_4V91_002 | No text annotation | ||
HL_4V91_003 | No text annotation | ||
HL_4V91_004 | No text annotation | ||
HL_4V91_005 | T-loop with 2 stacked bulged bases | ||
HL_4V91_006 | No text annotation | ||
HL_4V91_007 | T-loop with unstacked turn | ||
HL_4V91_008 | No text annotation | ||
HL_4V91_009 | Pseudoknot geometry | ||
HL_4V91_010 | GNRA | ||
HL_4V91_011 | GNRA | ||
HL_4V91_079 | No text annotation | ||
HL_4V91_012 | No text annotation | ||
HL_4V91_086 | No text annotation | ||
HL_4V91_013 | GNRA | ||
HL_4V91_014 | T-loop with 2 stacked bulged bases | ||
HL_4V91_015 | No text annotation | ||
HL_4V91_016 | GNRA | ||
HL_4V91_017 | GNRA | ||
HL_4V91_018 | No text annotation | ||
HL_4V91_019 | GNRA | ||
HL_4V91_022 | Externally structured | ||
HL_4V91_023 | GNRA | ||
HL_4V91_024 | T-loop related | ||
HL_4V91_025 | GNRA | ||
HL_4V91_026 | No text annotation | ||
HL_4V91_027 | No text annotation | ||
HL_4V91_080 | No text annotation | ||
HL_4V91_028 | No text annotation | ||
HL_4V91_029 | No text annotation | ||
HL_4V91_030 | GNRA | ||
HL_4V91_031 | T-loop with 2 stacked bulged bases | ||
HL_4V91_032 | Pseudoknot geometry with 3' bulge | ||
HL_4V91_033 | GNRA variation | ||
HL_4V91_034 | No text annotation | ||
HL_4V91_081 | No text annotation | ||
HL_4V91_036 | GNRA | ||
HL_4V91_037 | tRNA D-loop | ||
HL_4V91_038 | No text annotation | ||
HL_4V91_039 | No text annotation | ||
HL_4V91_088 | No text annotation | ||
HL_4V91_040 | Mini UNCG | ||
HL_4V91_042 | GNRA | ||
HL_4V91_044 | No text annotation | ||
HL_4V91_045 | No text annotation | ||
HL_4V91_047 | GNRA | ||
HL_4V91_048 | GNRA | ||
HL_4V91_082 | No text annotation | ||
HL_4V91_049 | No text annotation | ||
HL_4V91_050 | No text annotation | ||
HL_4V91_051 | No text annotation | ||
HL_4V91_083 | No text annotation | ||
HL_4V91_052 | No text annotation | ||
HL_4V91_084 | No text annotation | ||
HL_4V91_053 | No text annotation | ||
HL_4V91_054 | No text annotation | ||
HL_4V91_055 | No text annotation | ||
HL_4V91_056 | No text annotation | ||
HL_4V91_057 | No text annotation | ||
HL_4V91_058 | Pseudoknot geometry | ||
HL_4V91_059 | No text annotation | ||
HL_4V91_060 | GNRA | ||
HL_4V91_061 | Pseudoknot geometry | ||
HL_4V91_062 | No text annotation | ||
HL_4V91_063 | No text annotation | ||
HL_4V91_066 | GNRA | ||
HL_4V91_067 | Ribsomal LSU H95 | ||
HL_4V91_068 | No text annotation | ||
HL_4V91_069 | No text annotation | ||
HL_4V91_070 | No text annotation | ||
HL_4V91_071 | No text annotation | ||
HL_4V91_072 | Mini UNCG | ||
HL_4V91_085 | No text annotation | ||
HL_4V91_073 | No text annotation | ||
HL_4V91_074 | GNRA | ||
HL_4V91_075 | Pseudoknot with intercalation | ||
HL_4V91_076 | No text annotation | ||
HL_4V91_077 | No text annotation | ||
HL_4V91_078 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4V91_035 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
IL_4V91_036 | 1/1/873:875, 1/1/886:887 | Single bulged U | homologous IL_5TBW_032 NA | |
IL_4V91_037 | 1/1/907:909, 1/1/919:923 | Multiple bulged bases | homologous IL_5TBW_033 NA | |
IL_4V91_075 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
IL_4V91_076 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend | homologous IL_5TBW_070 NA | |
IL_4V91_082 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
IL_4V91_165 | 1/1/1898:1906, 1/1/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
IL_4V91_083 | 1/1/1901:1906, 1/1/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
IL_4V91_084 | 1/1/1918:1923, 1/1/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
IL_4V91_088 | 1/1/2128:2129, 1/1/2323:2325 | Single bulged A | homologous IL_5TBW_082 NA | |
IL_4V91_089 | 1/1/2156:2161, 1/1/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
IL_4V91_091 | 1/1/2196:2199, 1/1/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
IL_4V91_096 | 1/1/2276:2277, 1/1/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
IL_4V91_097 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
IL_4V91_101 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform | homologous IL_8C3A_099 NA | |
IL_4V91_117 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
IL_4V91_118 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
IL_4V91_121 | 1/1/2918:2920, 1/1/2926:2928 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
IL_4V91_122 | 1/1/2960:2961, 1/1/2970:2972 | Single bulged A | homologous IL_5TBW_113 NA | |
IL_4V91_129 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases | homologous IL_5TBW_119 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4V91_001 | No text annotation | ||
IL_4V91_002 | Single bulged C | ||
IL_4V91_003 | Single bulged U | ||
IL_4V91_004 | Single stack bend | ||
IL_4V91_005 | tSH-tHW-tHH-tHS | ||
IL_4V91_006 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4V91_007 | No text annotation | ||
IL_4V91_008 | Isolated non-canonical cWW pair | ||
IL_4V91_009 | Isolated non-canonical cWW pair | ||
IL_4V91_159 | Single stack bend | ||
IL_4V91_010 | No text annotation | ||
IL_4V91_011 | No text annotation | ||
IL_4V91_012 | Isolated cWH basepair | ||
IL_4V91_013 | Tandem non-canonical cWW pairs | ||
IL_4V91_160 | No text annotation | ||
IL_4V91_014 | Major groove platform with extra pair | ||
IL_4V91_015 | Single bulged U | ||
IL_4V91_016 | Single bulged A | ||
IL_4V91_017 | No text annotation | ||
IL_4V91_018 | Triple sheared with non-canonical cWW | ||
IL_4V91_019 | Isolated non-canonical cWW pair | ||
IL_4V91_020 | Kink-turn related | ||
IL_4V91_021 | No text annotation | ||
IL_4V91_022 | Single bulged A | ||
IL_4V91_023 | No text annotation | ||
IL_4V91_161 | No text annotation | ||
IL_4V91_024 | No text annotation | ||
IL_4V91_169 | No text annotation | ||
IL_4V91_162 | No text annotation | ||
IL_4V91_025 | Isolated non-canonical cWW pair | ||
IL_4V91_026 | No text annotation | ||
IL_4V91_027 | UAA/GAN variation | ||
IL_4V91_028 | Single bulged A | ||
IL_4V91_163 | Single bulged U | ||
IL_4V91_029 | Isolated cWS basepair | ||
IL_4V91_030 | No text annotation | ||
IL_4V91_031 | Isolated non-canonical cWW pair | ||
IL_4V91_032 | No text annotation | ||
IL_4V91_033 | Single bulged G | ||
IL_4V91_034 | Triple sheared | ||
IL_4V91_038 | Isolated non-canonical cWW pair | ||
IL_4V91_039 | No text annotation | ||
IL_4V91_170 | Single stack bend | ||
IL_4V91_040 | 180 degree turn | ||
IL_4V91_041 | Single bulged G | ||
IL_4V91_042 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
IL_4V91_043 | Minor groove platform | ||
IL_4V91_044 | C-loop | ||
IL_4V91_045 | No text annotation | ||
IL_4V91_171 | Tandem non-canonical cWW pairs | ||
IL_4V91_046 | Isolated non-canonical cWW pair | ||
IL_4V91_047 | Other IL | ||
IL_4V91_164 | No text annotation | ||
IL_4V91_048 | Isolated non-canonical cWW pair | ||
IL_4V91_049 | Tandem non-canonical cWW pairs | ||
IL_4V91_050 | Single bulged A | ||
IL_4V91_051 | Isolated non-canonical cWW pair | ||
IL_4V91_052 | No text annotation | ||
IL_4V91_053 | UAA/GAN | ||
IL_4V91_054 | SSU/LSU pseudoknot | ||
IL_4V91_055 | Single bulged U | ||
IL_4V91_056 | No text annotation | ||
IL_4V91_057 | No text annotation | ||
IL_4V91_058 | Single bulged U | ||
IL_4V91_059 | Kink-turn | ||
IL_4V91_060 | Isolated non-canonical cWW pair | ||
IL_4V91_061 | No text annotation | ||
IL_4V91_062 | Major groove platform with extra cWW | ||
IL_4V91_063 | No text annotation | ||
IL_4V91_064 | Single bulged A | ||
IL_4V91_065 | Kink-turn | ||
IL_4V91_066 | Single bulged A | ||
IL_4V91_067 | 7x6 Sarcin-Ricin; G-bulge | ||
IL_4V91_068 | No text annotation | ||
IL_4V91_069 | UAA/GAN | ||
IL_4V91_070 | Other IL | ||
IL_4V91_071 | No text annotation | ||
IL_4V91_072 | Triple sheared | ||
IL_4V91_073 | Isolated non-canonical cWW pair | ||
IL_4V91_074 | Isolated non-canonical cWW pair | ||
IL_4V91_077 | No text annotation | ||
IL_4V91_078 | No text annotation | ||
IL_4V91_079 | Kink-turn | ||
IL_4V91_080 | No text annotation | ||
IL_4V91_081 | No text annotation | ||
IL_4V91_085 | Isolated non-canonical cWW pair | ||
IL_4V91_086 | No text annotation | ||
IL_4V91_087 | Single stack bend | ||
IL_4V91_090 | Isolated non-canonical cWW pair | ||
IL_4V91_092 | Multiple bulged bases | ||
IL_4V91_093 | Single bulged U | ||
IL_4V91_166 | No text annotation | ||
IL_4V91_094 | Major groove platform with extra pair | ||
IL_4V91_095 | No text annotation | ||
IL_4V91_098 | Major groove platform with extra pair | ||
IL_4V91_099 | No text annotation | ||
IL_4V91_100 | Single bulged U | ||
IL_4V91_102 | No text annotation | ||
IL_4V91_103 | No text annotation | ||
IL_4V91_104 | No text annotation | ||
IL_4V91_105 | No text annotation | ||
IL_4V91_106 | No text annotation | ||
IL_4V91_107 | Single bulged A | ||
IL_4V91_108 | Isolated tHS basepair with bulges | ||
IL_4V91_109 | Tandem non-canonical cWW pairs | ||
IL_4V91_167 | No text annotation | ||
IL_4V91_110 | Single stack bend | ||
IL_4V91_111 | Major groove platform | ||
IL_4V91_112 | Isolated non-canonical cWW pair | ||
IL_4V91_113 | Major groove platform | ||
IL_4V91_114 | Major groove minor groove platform with extra cWW | ||
IL_4V91_115 | Triple sheared | ||
IL_4V91_116 | Major groove platform | ||
IL_4V91_119 | Isolated non-canonical cWW pair | ||
IL_4V91_168 | No text annotation | ||
IL_4V91_120 | Major groove platform with intercalation | ||
IL_4V91_123 | Double sheared | ||
IL_4V91_172 | Isolated non-canonical cWW pair | ||
IL_4V91_124 | Tandem non-canonical cWW pairs | ||
IL_4V91_125 | No text annotation | ||
IL_4V91_126 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4V91_127 | Major groove minor groove platform with tHH | ||
IL_4V91_128 | UAA/GAN related | ||
IL_4V91_130 | UAA/GAN | ||
IL_4V91_131 | No text annotation | ||
IL_4V91_173 | No text annotation | ||
IL_4V91_132 | Isolated non-canonical cWW pair | ||
IL_4V91_133 | Single bulged A | ||
IL_4V91_134 | No text annotation | ||
IL_4V91_135 | Single bulged U | ||
IL_4V91_136 | Isolated cWS basepair | ||
IL_4V91_137 | No text annotation | ||
IL_4V91_138 | Isolated non-canonical cWW pair | ||
IL_4V91_139 | Tandem non-canonical cWW pairs | ||
IL_4V91_140 | Tandem non-canonical cWW pairs | ||
IL_4V91_141 | Single bulged U | ||
IL_4V91_142 | Single bulged U | ||
IL_4V91_143 | Isolated non-canonical cWW pair | ||
IL_4V91_144 | No text annotation | ||
IL_4V91_145 | Single bulged U | ||
IL_4V91_146 | Double sheared; A in syn | ||
IL_4V91_147 | No text annotation | ||
IL_4V91_148 | Multiple bulged bases | ||
IL_4V91_149 | Single bulged A | ||
IL_4V91_150 | Minor groove platform related | ||
IL_4V91_151 | Minor groove platform | ||
IL_4V91_152 | Single stack bend | ||
IL_4V91_153 | Symmetric double minor groove platform | ||
IL_4V91_154 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4V91_155 | Isolated non-canonical cWW pair | ||
IL_4V91_156 | Isolated non-canonical cWW pair | ||
IL_4V91_157 | Single bulged U | ||
IL_4V91_158 | Isolated cWH basepair |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4V91_013 | 1/1/340:356, 1/1/363:368, 1/4/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
J3_4V91_002 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
J3_4V91_005 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
J3_4V91_029 | 1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
J4_4V91_003 | 1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
J4_4V91_004 | 1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
J4_4V91_010 | 1/1/1674:1675, 1/1/1693:1694, 1/1/1752:1753, 1/1/1772:1773 | No text annotation | homologous J4_8CRE_005 NA | |
J4_4V91_005 | 1/1/1674:1675, 1/1/1693:1694, 1/1/1752:1754, 1/1/1771:1773 | No text annotation | ||
J4_4V91_006 | 1/1/2130:2134, 1/1/2146:2150, 1/1/2186:2190, 1/1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
J4_4V91_007 | 1/1/2192:2194, 1/1/2248:2249, 1/1/2267:2276, 1/1/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
J5_4V91_004 | 1/1/1906:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
J5_4V91_005 | 1/1/2399:2406, 1/1/2815:2823, 1/1/2867:2876, 1/1/2951:2957, 1/1/2975:2980 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_4V91_001 | No text annotation | ||
J3_4V91_012 | No text annotation | ||
J3_4V91_014 | No text annotation | ||
J3_4V91_015 | No text annotation | ||
J3_4V91_016 | No text annotation | ||
J3_4V91_003 | No text annotation | ||
J3_4V91_017 | No text annotation | ||
J3_4V91_018 | No text annotation | ||
J3_4V91_027 | No text annotation | ||
J3_4V91_004 | No text annotation | ||
J3_4V91_006 | No text annotation | ||
J3_4V91_019 | No text annotation | ||
J3_4V91_028 | No text annotation | ||
J3_4V91_020 | No text annotation | ||
J3_4V91_021 | No text annotation | ||
J3_4V91_022 | No text annotation | ||
J3_4V91_007 | No text annotation | ||
J3_4V91_030 | No text annotation | ||
J3_4V91_008 | No text annotation | ||
J3_4V91_023 | No text annotation | ||
J3_4V91_009 | No text annotation | ||
J3_4V91_010 | No text annotation | ||
J3_4V91_024 | No text annotation | ||
J3_4V91_011 | No text annotation | ||
J3_4V91_025 | No text annotation | ||
J3_4V91_026 | No text annotation | ||
J4_4V91_001 | No text annotation | ||
J4_4V91_002 | No text annotation | ||
J4_4V91_011 | No text annotation | ||
J4_4V91_008 | No text annotation | ||
J4_4V91_009 | No text annotation | ||
J5_4V91_001 | No text annotation | ||
J5_4V91_007 | No text annotation | ||
J5_4V91_002 | No text annotation | ||
J5_4V91_003 | No text annotation | ||
J5_4V91_006 | No text annotation | ||
J6_4V91_001 | No text annotation | ||
J6_4V91_002 | No text annotation | ||
J7_4V91_001 | No text annotation |
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