RNA 3D Hub //

4V91 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V91_0201/1/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_4V91_0211/1/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_4V91_0351/1/1599:1608No text annotation
homologous
HL_8C3A_035
NA
HL_4V91_0871/1/1680:1688Pseudoknot geometry
homologous
HL_8P9A_148
HL_22758.1
HL_4V91_0411/1/1844:1851No text annotation
homologous
HL_8C3A_041
NA
HL_4V91_0431/1/1923:1928No text annotation
geometric
HL_7RQB_042
NA
HL_4V91_0461/1/2135:2145No text annotation
homologous
HL_5TBW_046
NA
HL_4V91_0641/1/2920:2926No text annotation
homologous
HL_5TBW_063
NA
HL_4V91_0651/1/2963:2968GNRA
homologous
HL_8C3A_065
NA

Problematic loops

#loop idProblemSequence
HL_4V91_001No text annotation
HL_4V91_002No text annotation
HL_4V91_003No text annotation
HL_4V91_004No text annotation
HL_4V91_005T-loop with 2 stacked bulged bases
HL_4V91_006No text annotation
HL_4V91_007T-loop with unstacked turn
HL_4V91_008No text annotation
HL_4V91_009Pseudoknot geometry
HL_4V91_010GNRA
HL_4V91_011GNRA
HL_4V91_079No text annotation
HL_4V91_012No text annotation
HL_4V91_086No text annotation
HL_4V91_013GNRA
HL_4V91_014T-loop with 2 stacked bulged bases
HL_4V91_015No text annotation
HL_4V91_016GNRA
HL_4V91_017GNRA
HL_4V91_018No text annotation
HL_4V91_019GNRA
HL_4V91_022Externally structured
HL_4V91_023GNRA
HL_4V91_024T-loop related
HL_4V91_025GNRA
HL_4V91_026No text annotation
HL_4V91_027No text annotation
HL_4V91_080No text annotation
HL_4V91_028No text annotation
HL_4V91_029No text annotation
HL_4V91_030GNRA
HL_4V91_031T-loop with 2 stacked bulged bases
HL_4V91_032Pseudoknot geometry with 3' bulge
HL_4V91_033GNRA variation
HL_4V91_034No text annotation
HL_4V91_081No text annotation
HL_4V91_036GNRA
HL_4V91_037tRNA D-loop
HL_4V91_038No text annotation
HL_4V91_039No text annotation
HL_4V91_088No text annotation
HL_4V91_040Mini UNCG
HL_4V91_042GNRA
HL_4V91_044No text annotation
HL_4V91_045No text annotation
HL_4V91_047GNRA
HL_4V91_048GNRA
HL_4V91_082No text annotation
HL_4V91_049No text annotation
HL_4V91_050No text annotation
HL_4V91_051No text annotation
HL_4V91_083No text annotation
HL_4V91_052No text annotation
HL_4V91_084No text annotation
HL_4V91_053No text annotation
HL_4V91_054No text annotation
HL_4V91_055No text annotation
HL_4V91_056No text annotation
HL_4V91_057No text annotation
HL_4V91_058Pseudoknot geometry
HL_4V91_059No text annotation
HL_4V91_060GNRA
HL_4V91_061Pseudoknot geometry
HL_4V91_062No text annotation
HL_4V91_063No text annotation
HL_4V91_066GNRA
HL_4V91_067Ribsomal LSU H95
HL_4V91_068No text annotation
HL_4V91_069No text annotation
HL_4V91_070No text annotation
HL_4V91_071No text annotation
HL_4V91_072Mini UNCG
HL_4V91_085No text annotation
HL_4V91_073No text annotation
HL_4V91_074GNRA
HL_4V91_075Pseudoknot with intercalation
HL_4V91_076No text annotation
HL_4V91_077No text annotation
HL_4V91_078No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V91_0351/1/869:872,
1/1/888:890		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_4V91_0361/1/873:875,
1/1/886:887		Single bulged U
homologous
IL_5TBW_032
NA
IL_4V91_0371/1/907:909,
1/1/919:923		Multiple bulged bases
homologous
IL_5TBW_033
NA
IL_4V91_0751/1/1669:1670,
1/1/1778:1780		Single bulged C
geometric
IL_5TBW_069
NA
IL_4V91_0761/1/1670:1671,
1/1/1776:1778		Single stack bend
homologous
IL_5TBW_070
NA
IL_4V91_0821/1/1898:1901,
1/1/2336:2337		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_4V91_1651/1/1898:1906,
1/1/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_4V91_0831/1/1901:1906,
1/1/2333:2336		No text annotation
homologous
IL_8C3A_083
NA
IL_4V91_0841/1/1918:1923,
1/1/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_4V91_0881/1/2128:2129,
1/1/2323:2325		Single bulged A
homologous
IL_5TBW_082
NA
IL_4V91_0891/1/2156:2161,
1/1/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_4V91_0911/1/2196:2199,
1/1/2245:2246		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_4V91_0961/1/2276:2277,
1/1/2307:2310		No text annotation
homologous
IL_8C3A_094
NA
IL_4V91_0971/1/2277:2288,
1/1/2304:2307		No text annotation
geometric
IL_5TBW_090
NA
IL_4V91_1011/1/2412:2413,
1/1/2807:2810		Minor groove platform
homologous
IL_8C3A_099
NA
IL_4V91_1171/1/2879:2881,
1/1/2943:2947		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_4V91_1181/1/2881:2882,
1/1/2940:2943		Multiple bulged bases
homologous
IL_5TBW_109
NA
IL_4V91_1211/1/2918:2920,
1/1/2926:2928		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_4V91_1221/1/2960:2961,
1/1/2970:2972		Single bulged A
homologous
IL_5TBW_113
NA
IL_4V91_1291/1/3063:3064,
1/1/3077:3080		Multiple bulged bases
homologous
IL_5TBW_119
NA

Problematic loops

#loop idProblemSequence
IL_4V91_001No text annotation
IL_4V91_002Single bulged C
IL_4V91_003Single bulged U
IL_4V91_004Single stack bend
IL_4V91_005tSH-tHW-tHH-tHS
IL_4V91_0068x7 Sarcin-Ricin; G-bulge
IL_4V91_007No text annotation
IL_4V91_008Isolated non-canonical cWW pair
IL_4V91_009Isolated non-canonical cWW pair
IL_4V91_159Single stack bend
IL_4V91_010No text annotation
IL_4V91_011No text annotation
IL_4V91_012Isolated cWH basepair
IL_4V91_013Tandem non-canonical cWW pairs
IL_4V91_160No text annotation
IL_4V91_014Major groove platform with extra pair
IL_4V91_015Single bulged U
IL_4V91_016Single bulged A
IL_4V91_017No text annotation
IL_4V91_018Triple sheared with non-canonical cWW
IL_4V91_019Isolated non-canonical cWW pair
IL_4V91_020Kink-turn related
IL_4V91_021No text annotation
IL_4V91_022Single bulged A
IL_4V91_023No text annotation
IL_4V91_161No text annotation
IL_4V91_024No text annotation
IL_4V91_169No text annotation
IL_4V91_162No text annotation
IL_4V91_025Isolated non-canonical cWW pair
IL_4V91_026No text annotation
IL_4V91_027UAA/GAN variation
IL_4V91_028Single bulged A
IL_4V91_163Single bulged U
IL_4V91_029Isolated cWS basepair
IL_4V91_030No text annotation
IL_4V91_031Isolated non-canonical cWW pair
IL_4V91_032No text annotation
IL_4V91_033Single bulged G
IL_4V91_034Triple sheared
IL_4V91_038Isolated non-canonical cWW pair
IL_4V91_039No text annotation
IL_4V91_170Single stack bend
IL_4V91_040180 degree turn
IL_4V91_041Single bulged G
IL_4V91_0427x7 Sarcin-Ricin with intercalated A; G-bulge
IL_4V91_043Minor groove platform
IL_4V91_044C-loop
IL_4V91_045No text annotation
IL_4V91_171Tandem non-canonical cWW pairs
IL_4V91_046Isolated non-canonical cWW pair
IL_4V91_047Other IL
IL_4V91_164No text annotation
IL_4V91_048Isolated non-canonical cWW pair
IL_4V91_049Tandem non-canonical cWW pairs
IL_4V91_050Single bulged A
IL_4V91_051Isolated non-canonical cWW pair
IL_4V91_052No text annotation
IL_4V91_053UAA/GAN
IL_4V91_054SSU/LSU pseudoknot
IL_4V91_055Single bulged U
IL_4V91_056No text annotation
IL_4V91_057No text annotation
IL_4V91_058Single bulged U
IL_4V91_059Kink-turn
IL_4V91_060Isolated non-canonical cWW pair
IL_4V91_061No text annotation
IL_4V91_062Major groove platform with extra cWW
IL_4V91_063No text annotation
IL_4V91_064Single bulged A
IL_4V91_065Kink-turn
IL_4V91_066Single bulged A
IL_4V91_0677x6 Sarcin-Ricin; G-bulge
IL_4V91_068No text annotation
IL_4V91_069UAA/GAN
IL_4V91_070Other IL
IL_4V91_071No text annotation
IL_4V91_072Triple sheared
IL_4V91_073Isolated non-canonical cWW pair
IL_4V91_074Isolated non-canonical cWW pair
IL_4V91_077No text annotation
IL_4V91_078No text annotation
IL_4V91_079Kink-turn
IL_4V91_080No text annotation
IL_4V91_081No text annotation
IL_4V91_085Isolated non-canonical cWW pair
IL_4V91_086No text annotation
IL_4V91_087Single stack bend
IL_4V91_090Isolated non-canonical cWW pair
IL_4V91_092Multiple bulged bases
IL_4V91_093Single bulged U
IL_4V91_166No text annotation
IL_4V91_094Major groove platform with extra pair
IL_4V91_095No text annotation
IL_4V91_098Major groove platform with extra pair
IL_4V91_099No text annotation
IL_4V91_100Single bulged U
IL_4V91_102No text annotation
IL_4V91_103No text annotation
IL_4V91_104No text annotation
IL_4V91_105No text annotation
IL_4V91_106No text annotation
IL_4V91_107Single bulged A
IL_4V91_108Isolated tHS basepair with bulges
IL_4V91_109Tandem non-canonical cWW pairs
IL_4V91_167No text annotation
IL_4V91_110Single stack bend
IL_4V91_111Major groove platform
IL_4V91_112Isolated non-canonical cWW pair
IL_4V91_113Major groove platform
IL_4V91_114Major groove minor groove platform with extra cWW
IL_4V91_115Triple sheared
IL_4V91_116Major groove platform
IL_4V91_119Isolated non-canonical cWW pair
IL_4V91_168No text annotation
IL_4V91_120Major groove platform with intercalation
IL_4V91_123Double sheared
IL_4V91_172Isolated non-canonical cWW pair
IL_4V91_124Tandem non-canonical cWW pairs
IL_4V91_125No text annotation
IL_4V91_1268x7 Sarcin-Ricin; G-bulge
IL_4V91_127Major groove minor groove platform with tHH
IL_4V91_128UAA/GAN related
IL_4V91_130UAA/GAN
IL_4V91_131No text annotation
IL_4V91_173No text annotation
IL_4V91_132Isolated non-canonical cWW pair
IL_4V91_133Single bulged A
IL_4V91_134No text annotation
IL_4V91_135Single bulged U
IL_4V91_136Isolated cWS basepair
IL_4V91_137No text annotation
IL_4V91_138Isolated non-canonical cWW pair
IL_4V91_139Tandem non-canonical cWW pairs
IL_4V91_140Tandem non-canonical cWW pairs
IL_4V91_141Single bulged U
IL_4V91_142Single bulged U
IL_4V91_143Isolated non-canonical cWW pair
IL_4V91_144No text annotation
IL_4V91_145Single bulged U
IL_4V91_146Double sheared; A in syn
IL_4V91_147No text annotation
IL_4V91_148Multiple bulged bases
IL_4V91_149Single bulged A
IL_4V91_150Minor groove platform related
IL_4V91_151Minor groove platform
IL_4V91_152Single stack bend
IL_4V91_153Symmetric double minor groove platform
IL_4V91_1548x7 Sarcin-Ricin; G-bulge
IL_4V91_155Isolated non-canonical cWW pair
IL_4V91_156Isolated non-canonical cWW pair
IL_4V91_157Single bulged U
IL_4V91_158Isolated cWH basepair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V91_0131/1/340:356,
1/1/363:368,
1/4/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_4V91_0021/1/814:820,
1/1/905:907,
1/1/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_4V91_0051/1/1479:1485,
1/1/1857:1859,
1/1/1871:1874		No text annotation
homologous
J3_5TBW_008
NA
J3_4V91_0291/1/1654:1658,
1/1/1791:1792,
1/1/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J4_4V91_0031/1/1451:1457,
1/1/1475:1476,
1/1/1877:1880,
1/1/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_34212.1
J4_4V91_0041/1/1492:1496,
1/1/1520:1525,
1/1/1614:1615,
1/1/1829:1836		No text annotation
homologous
J4_8P9A_015
J4_47264.1
J4_4V91_0101/1/1674:1675,
1/1/1693:1694,
1/1/1752:1753,
1/1/1772:1773		No text annotation
homologous
J4_8CRE_005
NA
J4_4V91_0051/1/1674:1675,
1/1/1693:1694,
1/1/1752:1754,
1/1/1771:1773		No text annotation
J4_4V91_0061/1/2130:2134,
1/1/2146:2150,
1/1/2186:2190,
1/1/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_4V91_0071/1/2192:2194,
1/1/2248:2249,
1/1/2267:2276,
1/1/2310:2315		No text annotation
homologous
J4_8C3A_007
NA
J5_4V91_0041/1/1906:1914,
1/1/1938:1939,
1/1/2109:2110,
1/1/2114:2122,
1/1/2331:2333		No text annotation
homologous
J5_8P9A_013
J5_99177.1
J5_4V91_0051/1/2399:2406,
1/1/2815:2823,
1/1/2867:2876,
1/1/2951:2957,
1/1/2975:2980		No text annotation

Problematic loops

#loop idProblemSequence
J3_4V91_001No text annotation
J3_4V91_012No text annotation
J3_4V91_014No text annotation
J3_4V91_015No text annotation
J3_4V91_016No text annotation
J3_4V91_003No text annotation
J3_4V91_017No text annotation
J3_4V91_018No text annotation
J3_4V91_027No text annotation
J3_4V91_004No text annotation
J3_4V91_006No text annotation
J3_4V91_019No text annotation
J3_4V91_028No text annotation
J3_4V91_020No text annotation
J3_4V91_021No text annotation
J3_4V91_022No text annotation
J3_4V91_007No text annotation
J3_4V91_030No text annotation
J3_4V91_008No text annotation
J3_4V91_023No text annotation
J3_4V91_009No text annotation
J3_4V91_010No text annotation
J3_4V91_024No text annotation
J3_4V91_011No text annotation
J3_4V91_025No text annotation
J3_4V91_026No text annotation
J4_4V91_001No text annotation
J4_4V91_002No text annotation
J4_4V91_011No text annotation
J4_4V91_008No text annotation
J4_4V91_009No text annotation
J5_4V91_001No text annotation
J5_4V91_007No text annotation
J5_4V91_002No text annotation
J5_4V91_003No text annotation
J5_4V91_006No text annotation
J6_4V91_001No text annotation
J6_4V91_002No text annotation
J7_4V91_001No text annotation

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