IL_4V92_004

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

4V92|1|A2|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_004 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.1661

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

4V92|1|A2|U|37
4V92|1|A2|C|38
4V92|1|A2|A|39
4V92|1|A2|A|40
4V92|1|A2|A|41
*
4V92|1|A2|U|466
4V92|1|A2|G|467
4V92|1|A2|A|468
4V92|1|A2|C|469
4V92|1|A2|A|470
4V92|1|A2|A|471

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BX

US12