IL_4V92_008

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_008 not in the Motif Atlas

Homologous match to IL_4V88_391

Geometric discrepancy: 0.1605

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V92|1|A2|G|109
4V92|1|A2|U|110
4V92|1|A2|U|111
4V92|1|A2|A|112
*
4V92|1|A2|U|302
4V92|1|A2|U|303
4V92|1|A2|U|304
4V92|1|A2|C|305

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BE

ES4

Chain BI

ES8

Chain BJ

US4