IL_4V92_009

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUCGU*AAU

Length

8 nucleotides

Bulged bases

4V92|1|A2|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_009 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2982

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V92|1|A2|A|112
4V92|1|A2|U|113
4V92|1|A2|C|114
4V92|1|A2|G|115
4V92|1|A2|U|116
*
4V92|1|A2|A|300
4V92|1|A2|A|301
4V92|1|A2|U|302

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BE

ES4

Chain BI

ES8