IL_4V92_021

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

4V92|1|A2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_021 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.175

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V92|1|A2|G|363
4V92|1|A2|G|364
4V92|1|A2|G|365
*
4V92|1|A2|C|376
4V92|1|A2|G|377
4V92|1|A2|A|378
4V92|1|A2|U|379
4V92|1|A2|U|380
4V92|1|A2|C|381

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BE

ES4

Chain BJ

US4

Chain BX

US12