IL_4V92_030

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_030 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1808

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

4V92|1|A2|A|550
4V92|1|A2|G|551
4V92|1|A2|G|552
4V92|1|A2|G|553
4V92|1|A2|C|554
4V92|1|A2|A|555
4V92|1|A2|A|556
4V92|1|A2|G|557
*
4V92|1|A2|C|587
4V92|1|A2|U|588

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BJ

US4

Chain BX

US12

Chain Be

ES30