IL_4V92_039

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_039 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.206

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

4V92|1|A2|A|746
4V92|1|A2|C|747
*
4V92|1|A2|G|802
4V92|1|A2|A|803
4V92|1|A2|A|804
4V92|1|A2|U|805

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BE

ES4

Chain BJ

US4

Chain BL

US17

Chain BW

US8