IL_4V92_052

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAU*GCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_052 not in the Motif Atlas

Homologous match to IL_4V88_438

Geometric discrepancy: 0.145

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V92|1|A2|G|1041
4V92|1|A2|G|1042
4V92|1|A2|A|1043
4V92|1|A2|U|1044
*
4V92|1|A2|G|1074
4V92|1|A2|C|1075
4V92|1|A2|A|1076
4V92|1|A2|C|1077

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BA

US2

Chain BV

ES21

Chain BW

US8

Chain Ba

ES26

Chain Bb

ES27