IL_4V92_055

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_055 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1204

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V92|1|A2|G|1111
4V92|1|A2|G|1112
4V92|1|A2|A|1113
4V92|1|A2|G|1114
4V92|1|A2|U|1115
4V92|1|A2|A|1116
4V92|1|A2|U|1117
4V92|1|A2|G|1118
*
4V92|1|A2|U|1129
4V92|1|A2|G|1130
4V92|1|A2|A|1131
4V92|1|A2|A|1132
4V92|1|A2|A|1133
4V92|1|A2|C|1134

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BX

US12