IL_4V92_066

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V92|1|A2|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_066 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.2766

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V92|1|A2|C|1280
4V92|1|A2|G|1281
*
4V92|1|A2|C|1426
4V92|1|A2|A|1427
4V92|1|A2|G|1428

Current chains

Chain A2

18S RRNA

Nearby chains

Chain AZ

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain BD

US3

Chain BQ

US9

Chain BU

US10

Chain Bd

US14