3D structure

PDB id
4V92 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUG*CAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V92_072 not in the Motif Atlas
Geometric match to IL_3LA5_001
Geometric discrepancy: 0.2403
The information below is about IL_3LA5_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

4V92|1|A2|G|1349
4V92|1|A2|U|1350
4V92|1|A2|G|1351
*
4V92|1|A2|C|1374
4V92|1|A2|A|1375
4V92|1|A2|C|1376

Current chains

Chain A2
18S RRNA

Nearby chains

Chain BQ
US9
Chain BT
ES19
Chain BU
US10

Coloring options:


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