IL_4V92_081

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V92|1|A2|C|1637, 4V92|1|A2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_081 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.183

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V92|1|A2|C|1636
4V92|1|A2|C|1637
4V92|1|A2|G|1638
*
4V92|1|A2|C|1764
4V92|1|A2|A|1765
4V92|1|A2|A|1766
4V92|1|A2|G|1767

Current chains

Chain A2

18S RRNA

Nearby chains

Chain AZ

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain Ba

ES26