IL_4V92_086

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_086 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.224

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4V92|1|A2|C|1653
4V92|1|A2|G|1654
4V92|1|A2|A|1655
4V92|1|A2|U|1656
*
4V92|1|A2|A|1744
4V92|1|A2|G|1745
4V92|1|A2|A|1746
4V92|1|A2|G|1747

Current chains

Chain A2

18S RRNA

Nearby chains