IL_4V92_088

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_088 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.213

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V92|1|A2|G|1658
4V92|1|A2|A|1659
4V92|1|A2|A|1660
4V92|1|A2|U|1661
*
4V92|1|A2|A|1740
4V92|1|A2|U|1741
4V92|1|A2|U|1742
4V92|1|A2|U|1743

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BX

US12