IL_4V92_090

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_090 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.2103

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4V92|1|A2|U|1669
4V92|1|A2|G|1670
4V92|1|A2|A|1671
4V92|1|A2|G|1672
*
4V92|1|A2|C|1729
4V92|1|A2|A|1730
4V92|1|A2|A|1731
4V92|1|A2|A|1732

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BG

ES6

Chain BI

ES8