IL_4V92_107

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCGGUU*AACGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_107 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3108

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V92|1|A2|C|645
4V92|1|A2|C|646
4V92|1|A2|G|647
4V92|1|A2|G|648
4V92|1|A2|U|649
4V92|1|A2|U|650
*
4V92|1|A2|A|684
4V92|1|A2|A|685
4V92|1|A2|C|686
4V92|1|A2|G|687
4V92|1|A2|G|688
4V92|1|A2|G|689

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BE

ES4

Chain BJ

US4