IL_4V92_110

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAUUC*GAAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_110 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.2628

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4V92|1|A2|U|886
4V92|1|A2|A|887
4V92|1|A2|U|888
4V92|1|A2|U|889
4V92|1|A2|C|890
*
4V92|1|A2|G|922
4V92|1|A2|A|923
4V92|1|A2|A|924
4V92|1|A2|G|925
4V92|1|A2|A|926

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BB

ES1

Chain BO

US11

Chain Ba

ES26