IL_4V95_020
3D structure
- PDB id
- 4V95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of YAEJ bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGCCAACUC*GAGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V95_020 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.3704
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4V95|1|AA|C|504
4V95|1|AA|G|505
4V95|1|AA|G|506
4V95|1|AA|C|507
4V95|1|AA|C|508
4V95|1|AA|A|509
4V95|1|AA|A|510
4V95|1|AA|C|511
4V95|1|AA|U|512
4V95|1|AA|C|513
*
4V95|1|AA|G|538
4V95|1|AA|A|539
4V95|1|AA|G|540
4V95|1|AA|G|541
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AC
- 30S Ribosomal Protein S3
- Chain AD
- 30S Ribosomal Protein S4
- Chain AL
- 30S Ribosomal Protein S12
- Chain AY
- YAEJ
Coloring options: