3D structure

PDB id
4V95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of YAEJ bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
4V95|1|BA|A|1938, 4V95|1|BA|U|1944, 4V95|1|BA|U|1963
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V95_138 not in the Motif Atlas
Geometric match to IL_4WF9_077
Geometric discrepancy: 0.1059
The information below is about IL_4WF9_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_84014.1
Basepair signature
cWW-L-R-cHW-cWW-L-L-tSW-L
Number of instances in this motif group
8

Unit IDs

4V95|1|BA|C|1934
4V95|1|BA|G|1935
4V95|1|BA|A|1936
4V95|1|BA|A|1937
4V95|1|BA|A|1938
4V95|1|BA|U|1939
4V95|1|BA|U|1940
4V95|1|BA|C|1941
4V95|1|BA|C|1942
4V95|1|BA|U|1943
4V95|1|BA|U|1944
4V95|1|BA|G|1945
*
4V95|1|BA|C|1961
4V95|1|BA|C|1962
4V95|1|BA|U|1963
4V95|1|BA|G|1964

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AY
YAEJ
Chain BD
50S Ribosomal Protein L2

Coloring options:


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