IL_4V95_236

3D structure

PDB id

4V95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YAEJ bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGGAG*CGUGGAUCC

Length

15 nucleotides

Bulged bases

4V95|1|DA|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V95_236 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.2471

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V95|1|DA|G|80
4V95|1|DA|G|81
4V95|1|DA|G|82
4V95|1|DA|G|83
4V95|1|DA|A|84
4V95|1|DA|G|85
*
4V95|1|DA|C|97
4V95|1|DA|G|98
4V95|1|DA|U|99
4V95|1|DA|G|100
4V95|1|DA|G|102
4V95|1|DA|A|103
4V95|1|DA|U|104
4V95|1|DA|C|105
4V95|1|DA|C|106

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D2

50S Ribosomal Protein L29

Chain DY

50S Ribosomal Protein L24