IL_4V95_250

3D structure

PDB id

4V95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YAEJ bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V95|1|DA|G|801, 4V95|1|DA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V95_250 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.0923

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V95|1|DA|G|674
4V95|1|DA|A|675
4V95|1|DA|A|676
4V95|1|DA|A|677
4V95|1|DA|C|678
*
4V95|1|DA|G|799
4V95|1|DA|A|800
4V95|1|DA|G|801
4V95|1|DA|A|802
4V95|1|DA|U|803
4V95|1|DA|A|804
4V95|1|DA|G|805
4V95|1|DA|C|806

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S Ribosomal Protein L4

Chain DP

50S Ribosomal Protein L15