IL_4V95_340

3D structure

PDB id

4V95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YAEJ bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCC*GGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V95_340 not in the Motif Atlas

Geometric match to IL_5T83_002

Geometric discrepancy: 0.3998

The information below is about IL_5T83_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_83497.1

Basepair signature

cWW-L-R-cSH-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V95|1|DB|C|30
4V95|1|DB|C|31
4V95|1|DB|C|32
*
4V95|1|DB|G|50
4V95|1|DB|G|51
4V95|1|DB|A|52
4V95|1|DB|A|53
4V95|1|DB|G|54

Current chains

Chain DB

5S Ribosomal RNA

Nearby chains

Chain DG

50S Ribosomal Protein L5

Chain DS

50S Ribosomal Protein L18