IL_4V95_352

3D structure

PDB id

4V95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YAEJ bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUCACG*CGAAGUC

Length

13 nucleotides

Bulged bases

4V95|1|CA|A|1492, 4V95|1|CA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V95_352 not in the Motif Atlas

Homologous match to IL_6CZR_369

Geometric discrepancy: 0.5346

The information below is about IL_6CZR_369

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71294.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V95|1|CA|G|1405
4V95|1|CA|U|1406
4V95|1|CA|C|1407
4V95|1|CA|A|1408
4V95|1|CA|C|1409
4V95|1|CA|G|1410
*
4V95|1|CA|C|1490
4V95|1|CA|G|1491
4V95|1|CA|A|1492
4V95|1|CA|A|1493
4V95|1|CA|G|1494
4V95|1|CA|U|1495
4V95|1|CA|C|1496

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CL

30S Ribosomal Protein S12

Chain CX

mRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA