IL_4V95_355

3D structure

PDB id

4V95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YAEJ bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGCU*AAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V95_355 not in the Motif Atlas

Geometric match to IL_1U6B_004

Geometric discrepancy: 0.3886

The information below is about IL_1U6B_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20358.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V95|1|DA|G|874
4V95|1|DA|G|875
4V95|1|DA|C|876
4V95|1|DA|U|877
*
4V95|1|DA|A|899
4V95|1|DA|A|900
4V95|1|DA|A|901
4V95|1|DA|C|902
4V95|1|DA|C|903

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DQ

50S Ribosomal Protein L16

Chain DZ

50S Ribosomal Protein L25